Datasets and genome resources
Amoebidium appalachense
We have created a reference genome for the Ichthyosporean Amoebidium appalachense. The genome assembly, gene and functional annotation can be downloaded from the github repository: https://github.com/AlexdeMendoza/AmoebidiumGenomes/tree/main/ReferenceGenome
We host a genome browser session with 5mC methylation tracks, repeats, giant viruses and RNA-seq:
Amoebidium appalachense (9181) and Amoebidium parasiticum (9257)
We also generated genomes / transcriptomes for two different Amoebidium isolates, one for A. appalachense (isolate 9181) and one for A. parasiticum (isolate 9257): https://github.com/AlexdeMendoza/AmoebidiumGenomes/tree/main/Isolates
6mA epigenome tracks
We generated 6mA and 5mC tracks for several protists, as well as H3K4me3 and H3K27ac (Romero Charria et al 2026 Nat Gen), these can be found here:
Creolimax fragrantissima (https://tinyurl.com/22zs884x)
Spizellmyces punctatus (https://tinyurl.com/2d7jgzpz)
Acanthamoeba castellanii (https://tinyurl.com/22wjj72j)
Trichomonas vaginalis (https://tinyurl.com/2arl7o56)
Naegleria gruberi (https://tinyurl.com/mr44r47h)
Chlamydomonas reinhardtii (https://tinyurl.com/25aww7qk)
With new versions of the genomes of Chromosphaera perkinsii and Naegleria gruberi available in Github: https://github.com/AlexdeMendoza/6mA_evolution/tree/main/Genomes
Chromosphaera perkinsii (https://tinyurl.com/2fe92kvh)
